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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN13621.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 34478.4 Da PI: 8.0398 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5.2e-09 | 8 | 39 | 17 | 48 |
HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++G+g+W++++++ g+ R+ k+c++rw +yl KHN13621.1 8 EEHGPGNWRAVPAKTGLSRCSKSCRLRWTNYL 39 68****************************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 45 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ ++++ +lG++ W++Ia++++ Rt++++k++w+++l KHN13621.1 45 RGNFTEQEEKMIIHLQDLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 90 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 9.2 | 1 | 41 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 7.17 | 1 | 39 | IPR017930 | Myb domain |
CDD | cd00167 | 1.46E-4 | 8 | 39 | No hit | No description |
Pfam | PF00249 | 1.7E-7 | 8 | 39 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.86E-22 | 8 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-15 | 8 | 46 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.639 | 40 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-15 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-15 | 45 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.07E-11 | 47 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 47 | 95 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MSRGFEREEH GPGNWRAVPA KTGLSRCSKS CRLRWTNYLR PGIKRGNFTE QEEKMIIHLQ 60 DLLGNRWAAI ASYLPQRTDN DIKNYWNTHL RKKLKKMQVG CEGGSFGEGF SASRQIPRGQ 120 WERRLQTDIQ MAKRALSEAL SPEKPSCNLS ASNSNPSDSS SSFSSTKPTT TQTVCYASSA 180 DNIARMLKGW MKNPPKSSRT NSSSVTQNSF NNFAAAGADT ASSIGAKGPP SSAELSENNF 240 ESLFDFDQSL ESSNSDEFSR SLSPEATVLQ DESKPDVIGA EIMPFSLLEK WLLDEAGCQE 300 KLVGCGDDAK FF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-20 | 8 | 94 | 20 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 5e-20 | 8 | 94 | 74 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-20 | 8 | 94 | 74 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-20 | 8 | 94 | 20 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-20 | 8 | 94 | 20 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093784 | 0.0 | BT093784.1 Soybean clone JCVI-FLGm-24M4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240154.1 | 0.0 | MYB transcription factor MYB60 | ||||
Swissprot | P81392 | 9e-87 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A0B2PWB5 | 0.0 | A0A0B2PWB5_GLYSO; Myb-related protein 306 | ||||
STRING | GLYMA18G49360.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 2e-83 | myb domain protein 30 |
Publications ? help Back to Top | |||
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